Seriously, they are not in the depot. There is one camo net and one bino in there. I had one on every TD. I've got 97 TD's. I never dismount and remount those Items. Maybe that was foolish but never considered it an option I wanted. It happened last time there was a WOT update too. I'm not saying they are gone forever, but this happened exactly the same way last update. Its been fine for some time now but it was/is frustrating until all the stuff shows back up. If I recall it was a day or 2 later.
EDIT:Ok so they don't show like 90 of each in the depot, but if I click on each TD, I can load them manually. So they appear to be there like I thought. Just don't show in the depot. Im sure the Auxilium update will fix it later.