Found the problem with the mods, for whatever reason none of the mod files were placed in the res_mods\0.5.0.2 folder. Basically I copied and pasted all of the files from folder 0.5.0.1 to 0.5.0.2.
Here is the thread I found the answer in if you want to read for yourself: http://aslain.com/index.php?/topic/3417-mod-pack-wont-apply-itself-to-the-game/